Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs72649110 chr8:58031790 C/T 4.96E-6 498 31.27 38.17 36.93 KM Plot
THCA rs726873 chr7:43964846 T/C 1.6E-9 501 31.03 33.53 31.03 KM Plot
THCA rs72703972 chr4:183715247 A/G 2.4E-5 491 31.33 33.53 31.18 KM Plot
THCA rs72711907 chr14:100493650 T/G 1.08E-5 496 31.3 36.15 46.17 KM Plot
THCA rs7274050 chr20:47225402 T/G 0 502 31.6 32.07 6.78 KM Plot
THCA rs72758170 chr9:123773376 T/A 2.87E-5 502 31.7 31.37 21.97 KM Plot
THCA rs72831781 chr10:110968825 A/G 0.000133 502 31.47 32.13 32.1 KM Plot
THCA rs72854758 chr2:29038532 C/T 0.000138 502 31.68 30.97 38.87 KM Plot
THCA rs72926320 chr3:97043005 G/A 5.48E-6 502 31.43 33.78 41.97 KM Plot
THCA rs72926335 chr3:97060106 A/G 7.05E-13 500 31.47 33.7 37.77 KM Plot
THCA rs72926340 chr3:97066782 T/C 6.04E-6 499 31.47 33.7 41.97 KM Plot
THCA rs72930264 chr6:100038501 C/T 8.23E-5 491 31.62 34.83 24.55 KM Plot
THCA rs72932235 chr3:97343965 G/A 4.73E-7 493 31.47 31.03 33.7 KM Plot
THCA rs72964941 chr11:88025009 C/T 1.58E-7 491 31.43 35.6 5.47 KM Plot
THCA rs72966841 chr11:88070110 A/T 0 490 31.28 35.27 5.23 KM Plot